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LOC100259182 probable galacturonosyltransferase 15 [ Vitis vinifera (wine grape) ]

Gene ID: 100259182, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100259182
Gene description
probable galacturonosyltransferase 15
Locus tag
VIT_00000800001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100259182 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (469614..476426, complement)
102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (258474..265299)

Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1 Neighboring gene MAD-box transcripion factor Neighboring gene psbQ-like protein 3, chloroplastic Neighboring gene uncharacterized LOC109123525

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

    Range
    469614..476426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019223694.2 → XP_019079239.1  probable galacturonosyltransferase 15 isoform X6

    UniProtKB/TrEMBL
    A0A438IPL0

  2. XM_059741029.1 → XP_059597012.1  probable galacturonosyltransferase 15 isoform X4

  3. XM_059741026.1 → XP_059597009.1  probable galacturonosyltransferase 15 isoform X2

  4. XM_019223693.2 → XP_019079238.1  probable galacturonosyltransferase 15 isoform X5

    UniProtKB/TrEMBL
    A0A438IPL0

  5. XM_059741028.1 → XP_059597011.1  probable galacturonosyltransferase 15 isoform X3

  6. XM_010658635.3 → XP_010656937.1  probable galacturonosyltransferase 15 isoform X1

    See identical proteins and their annotated locations for XP_010656937.1

    UniProtKB/TrEMBL
    A0A438IPL0, D7TMP2
    Conserved Domains (2) summary
    cd06429
    Location:205 → 515
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02867
    Location:1 → 528
    PLN02867; Probable galacturonosyltransferase

  7. XM_059741027.1 → XP_059597010.1  probable galacturonosyltransferase 15 isoform X2

  8. XM_059741025.1 → XP_059597008.1  probable galacturonosyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    D7TMP2
Nucleotide Protein
Heading Accession and Version

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