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LOC100259167 digalactosyldiacylglycerol synthase 1, chloroplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100259167, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100259167
Gene description
digalactosyldiacylglycerol synthase 1, chloroplastic
Locus tag
VIT_00011149001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100259167 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (8487726..8514922, complement)
102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (7312930..7340176, complement)

Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain protein 1 Neighboring gene aluminum-activated malate transporter 8 Neighboring gene protein LEAD-SENSITIVE 1 Neighboring gene uncharacterized LOC100266012

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
digalactosyldiacylglycerol synthase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

    Range
    8487726..8514922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002264623.5 → XP_002264659.1  digalactosyldiacylglycerol synthase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    F6H6T0
    Conserved Domains (2) summary
    PLN02501
    Location:11 → 797
    PLN02501; digalactosyldiacylglycerol synthase
    cl10013
    Location:325 → 788
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  2. XM_059738923.1 → XP_059594906.1  digalactosyldiacylglycerol synthase 1, chloroplastic isoform X2

Nucleotide Protein
Heading Accession and Version

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