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LOC100258642 laccase-15 [ Vitis vinifera (wine grape) ]

Gene ID: 100258642, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100258642
Gene description
laccase-15
Locus tag
VIT_00012335001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100258642 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (20182864..20185821, complement)
102 previous assembly 12X (GCF_000003745.3) 18 Unlocalized Scaffold NW_003724187.1 (377954..380915, complement)

Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene laccase-15 Neighboring gene laccase-14 Neighboring gene transposon Tf2-1 polyprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

    Range
    20182864..20185821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002272653.4 → XP_002272689.1  laccase-15

    UniProtKB/TrEMBL
    A0A438H455, F6HJA5
    Conserved Domains (4) summary
    cd13849
    Location:30 → 146
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:161 → 308
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:411 → 550
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:24 → 558
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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