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LOC100254475 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100254475, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100254475
Gene description
1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic
Locus tag
VIT_00033801001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100254475 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (18873561..18918140)
102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (17680926..17725187)

Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance protein 2 Neighboring gene tyrosine-protein phosphatase RLPH2 Neighboring gene growth-regulating factor 3 Neighboring gene uncharacterized LOC100256294

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in starch metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

    Range
    18873561..18918140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010655748.3 → XP_010654050.1  1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic isoform X1

    See identical proteins and their annotated locations for XP_010654050.1

    UniProtKB/TrEMBL
    D7TJ35
    Conserved Domains (4) summary
    cd02854
    Location:226 → 319
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:323 → 738
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:63 → 859
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:756 → 851
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain

  2. XM_010655749.3 → XP_010654051.1  1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic isoform X2

    Conserved Domains (4) summary
    cd02854
    Location:205 → 298
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:302 → 717
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:42 → 838
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:735 → 830
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
Nucleotide Protein
Heading Accession and Version

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