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LOC100251641 digalactosyldiacylglycerol synthase 2, chloroplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100251641, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100251641
Gene description
digalactosyldiacylglycerol synthase 2, chloroplastic
Locus tag
VIT_00026818001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 15 NC_081819.1 (23506832..23511799)
102 previous assembly 12X (GCF_000003745.3) 15 NC_012021.3 (20263809..20268741)

Chromosome 15 - NC_081819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100246496 Neighboring gene uncharacterized LOC100248297 Neighboring gene uncharacterized LOC132255193 Neighboring gene anaphase-promoting complex subunit 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
digalactosyldiacylglycerol synthase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081819.1 Reference ASM3070453v1 Primary Assembly

    Range
    23506832..23511799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002266280.5 → XP_002266316.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    See identical proteins and their annotated locations for XP_002266316.1

    UniProtKB/TrEMBL
    A5B219, D7UC20
    Conserved Domains (2) summary
    PLN02846
    Location:1 → 462
    PLN02846; digalactosyldiacylglycerol synthase
    COG0438
    Location:6 → 387
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]

  2. XM_010663420.3 → XP_010661722.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    See identical proteins and their annotated locations for XP_010661722.1

    UniProtKB/TrEMBL
    A5B219, D7UC20
    Conserved Domains (2) summary
    PLN02846
    Location:1 → 462
    PLN02846; digalactosyldiacylglycerol synthase
    COG0438
    Location:6 → 387
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]

  3. XM_059743083.1 → XP_059599066.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    UniProtKB/TrEMBL
    A5B219, D7UC20

  4. XM_010663421.3 → XP_010661723.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    See identical proteins and their annotated locations for XP_010661723.1

    UniProtKB/TrEMBL
    A5B219, D7UC20
    Conserved Domains (2) summary
    PLN02846
    Location:1 → 462
    PLN02846; digalactosyldiacylglycerol synthase
    COG0438
    Location:6 → 387
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version

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