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LOC100251445 glucan endo-1,3-beta-glucosidase 2 [ Vitis vinifera (wine grape) ]

Gene ID: 100251445, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100251445
Gene description
glucan endo-1,3-beta-glucosidase 2
Locus tag
VIT_00030716001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (14390908..14395925)
102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (14461010..14465911)

Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 23-like Neighboring gene uncharacterized LOC132255069 Neighboring gene uncharacterized LOC109123847 Neighboring gene uncharacterized LOC104881578

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

    Range
    14390908..14395925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002265360.5 → XP_002265396.3  glucan endo-1,3-beta-glucosidase 2

    See identical proteins and their annotated locations for XP_002265396.3

    UniProtKB/TrEMBL
    A0A438HNW4, D7TSK7
    Conserved Domains (2) summary
    smart00768
    Location:358 → 443
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:22 → 339
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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