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LOC100251205 probable galacturonosyltransferase 6 [ Vitis vinifera (wine grape) ]

Gene ID: 100251205, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100251205
Gene description
probable galacturonosyltransferase 6
Locus tag
VIT_00000744001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (375931..383555)
102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (324399..332007, complement)

Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin protein ligase DRIP2 Neighboring gene magnesium transporter MRS2-I Neighboring gene photosystem II reaction center W protein, chloroplastic Neighboring gene uncharacterized LOC104879746 Neighboring gene uncharacterized LOC104879745

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

    Range
    375931..383555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002282066.5 → XP_002282102.1  probable galacturonosyltransferase 6 isoform X2

    See identical proteins and their annotated locations for XP_002282102.1

    UniProtKB/TrEMBL
    A0A438F4Q4, D7SQL4
    Conserved Domains (2) summary
    cd06429
    Location:299 → 575
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02718
    Location:1 → 588
    PLN02718; Probable galacturonosyltransferase

  2. XM_010653636.3 → XP_010651938.1  probable galacturonosyltransferase 6 isoform X3

    UniProtKB/TrEMBL
    A0A438F4Q4
    Conserved Domains (2) summary
    cd06429
    Location:299 → 575
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02718
    Location:1 → 588
    PLN02718; Probable galacturonosyltransferase

  3. XM_010653634.3 → XP_010651936.1  probable galacturonosyltransferase 6 isoform X1

    See identical proteins and their annotated locations for XP_010651936.1

    UniProtKB/TrEMBL
    A0A438F4Q4
    Conserved Domains (2) summary
    cd06429
    Location:300 → 576
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02718
    Location:1 → 589
    PLN02718; Probable galacturonosyltransferase
Nucleotide Protein
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