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LOC100251007 pectin acetylesterase 12 [ Vitis vinifera (wine grape) ]

Gene ID: 100251007, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100251007
Gene description
pectin acetylesterase 12
Locus tag
VIT_00017717001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100251007 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 5 NC_081809.1 (3079667..3087213)
102 previous assembly 12X (GCF_000003745.3) 5 NC_012011.3 (2869235..2876279)

Chromosome 5 - NC_081809.1Genomic Context describing neighboring genes Neighboring gene transcription factor HY5-like Neighboring gene transcription factor MYB61 Neighboring gene rhomboid-like protein 14, mitochondrial Neighboring gene DEAD-box ATP-dependent RNA helicase 50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectin acetylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectin acetylesterase 12
Names
protein notum homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081809.1 Reference ASM3070453v1 Primary Assembly

    Range
    3079667..3087213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002275580.5 → XP_002275616.1  pectin acetylesterase 12

    UniProtKB/TrEMBL
    A0A438KL66, F6HE55
    Conserved Domains (1) summary
    pfam03283
    Location:50 → 398
    PAE; Pectinacetylesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials