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LOC100250736 beta-1,3-galactosyltransferase 7 [ Vitis vinifera (wine grape) ]

Gene ID: 100250736, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100250736
Gene description
beta-1,3-galactosyltransferase 7
Locus tag
VIT_00022413001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100250736 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (30492582..30498407, complement)
102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (19855631..19861265, complement)

Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene MACPF domain-containing protein At4g24290 Neighboring gene isoflavone reductase-like protein 3 Neighboring gene DNA repair protein XRCC2 homolog Neighboring gene F-box protein FBW2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

    Range
    30492582..30498407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059738769.1 → XP_059594752.1  beta-1,3-galactosyltransferase 7 isoform X2

  2. XM_010654682.3 → XP_010652984.1  beta-1,3-galactosyltransferase 7 isoform X2

    UniProtKB/TrEMBL
    A0A438KJF9
    Conserved Domains (3) summary
    PLN03193
    Location:11 → 396
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:11 → 102
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:141 → 339
    Galactosyl_T; Galactosyltransferase

  3. XM_010654681.3 → XP_010652983.1  beta-1,3-galactosyltransferase 7 isoform X1

    See identical proteins and their annotated locations for XP_010652983.1

    UniProtKB/TrEMBL
    A0A438KJF9, D7SWK5
    Conserved Domains (3) summary
    PLN03193
    Location:11 → 397
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:11 → 103
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:142 → 340
    Galactosyl_T; Galactosyltransferase

  4. XM_059738770.1 → XP_059594753.1  beta-1,3-galactosyltransferase 7 isoform X3

Nucleotide Protein
Heading Accession and Version

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