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LOC100250461 xyloglucan endotransglucosylase protein 1 [ Vitis vinifera (wine grape) ]

Gene ID: 100250461, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100250461
Gene description
xyloglucan endotransglucosylase protein 1
Locus tag
VIT_00031576001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100250461 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 5 NC_081809.1 (20134161..20135872)
102 previous assembly 12X (GCF_000003745.3) 5 NC_012011.3 (18396842..18398611)

Chromosome 5 - NC_081809.1Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase subunit F-like Neighboring gene protein TIC 22-like, chloroplastic Neighboring gene xyloglucan endotransglucosylase protein 1 Neighboring gene uncharacterized LOC100267629

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase protein 1
Names
xyloglucan endotransglucosylase/hydrolase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081809.1 Reference ASM3070453v1 Primary Assembly

    Range
    20134161..20135872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002267854.5 → XP_002267890.2  xyloglucan endotransglucosylase protein 1

    UniProtKB/TrEMBL
    A0A438CGE4, F6I4C8
    Conserved Domains (2) summary
    PLN03161
    Location:13 → 279
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:22 → 274
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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