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LOC100249591 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [ Vitis vinifera (wine grape) ]

Gene ID: 100249591, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100249591
Gene description
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100249591 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (6483759..6488968)
102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (6402269..6407474)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Neighboring gene kinesin-like protein KIN-UC Neighboring gene exocyst complex component SEC8 Neighboring gene protein FLOWERING LOCUS D Neighboring gene uncharacterized mitochondrial protein AtMg00810-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
Names
UDP-galactose:fucoside alpha-3-galactosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    6483759..6488968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002273119.5 → XP_002273155.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4

    UniProtKB/TrEMBL
    A0A438DU61, F6HND5
    Conserved Domains (1) summary
    pfam03407
    Location:121 → 340
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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