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LOC100249518 long-chain-alcohol oxidase FAO1 [ Vitis vinifera (wine grape) ]

Gene ID: 100249518, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100249518
Gene description
long-chain-alcohol oxidase FAO1
Locus tag
VIT_00027855001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100249518 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 5 NC_081809.1 (8872208..8876183)
102 previous assembly 12X (GCF_000003745.3) 5 NC_012011.3 (8681226..8685195)

Chromosome 5 - NC_081809.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100263192 Neighboring gene KIN14B-interacting protein At4g14310 Neighboring gene phosphate transporter PHO1 Neighboring gene uncharacterized LOC132253807

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain-alcohol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-alcohol oxidase FAO1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081809.1 Reference ASM3070453v1 Primary Assembly

    Range
    8872208..8876183
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002285298.4 → XP_002285334.1  long-chain-alcohol oxidase FAO1

    UniProtKB/TrEMBL
    A5AH38, F6H8T4
    Conserved Domains (3) summary
    COG2303
    Location:250 → 740
    BetA; Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]
    pfam00732
    Location:279 → 500
    GMC_oxred_N; GMC oxidoreductase
    pfam05199
    Location:593 → 727
    GMC_oxred_C; GMC oxidoreductase
Nucleotide Protein
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