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LOC100249062 endoglucanase 16 [ Vitis vinifera (wine grape) ]

Gene ID: 100249062, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100249062
Gene description
endoglucanase 16
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (1642996..1646111, complement)
102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (1639471..1642516, complement)

Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene myosin-15 Neighboring gene uncharacterized LOC100260963 Neighboring gene endoglucanase 16 Neighboring gene fatty-acid-binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

    Range
    1642996..1646111 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002280065.5 → XP_002280101.3  endoglucanase 16

    UniProtKB/TrEMBL
    A0A438K859, F6H2S9
    Conserved Domains (2) summary
    PLN02420
    Location:11 → 483
    PLN02420; endoglucanase
    cl02959
    Location:7 → 486
    Glyco_hydro_9; Glycosyl hydrolase family 9
Nucleotide Protein
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