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LOC100248912 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [ Vitis vinifera (wine grape) ]

Gene ID: 100248912, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100248912
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
Locus tag
VIT_00026525001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100248912 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (24354574..24359361)
102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (22283395..22288181)

Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100243761 Neighboring gene uncharacterized LOC100252405 Neighboring gene probable pectinesterase/pectinesterase inhibitor 51 Neighboring gene uncharacterized LOC109122507 Neighboring gene probable pectinesterase/pectinesterase inhibitor 51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

    Range
    24354574..24359361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002275204.4 → XP_002275240.2  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1

    UniProtKB/TrEMBL
    F6I0G5
    Conserved Domains (2) summary
    cd02537
    Location:309 → 554
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    COG1442
    Location:384 → 520
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

  2. XM_059736531.1 → XP_059592514.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials