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LOC100248512 cellulose synthase A catalytic subunit 7 [UDP-forming] [ Vitis vinifera (wine grape) ]

Gene ID: 100248512, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100248512
Gene description
cellulose synthase A catalytic subunit 7 [UDP-forming]
Locus tag
VIT_00023643001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100248512 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (8547533..8552302)
102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (8370602..8375390)

Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein Neighboring gene translation initiation factor IF3-4, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At4g30700 Neighboring gene AUGMIN subunit 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 7 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

    Range
    8547533..8552302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002276854.5 → XP_002276890.2  cellulose synthase A catalytic subunit 7 [UDP-forming]

    See identical proteins and their annotated locations for XP_002276890.2

    UniProtKB/TrEMBL
    A5ARG8, D7U1D5
    Conserved Domains (3) summary
    PLN02189
    Location:1 → 1037
    PLN02189; cellulose synthase
    pfam14569
    Location:30 → 95
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:502 → 787
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials