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LOC100248328 xyloglucan endotransglucosylase protein 6 [ Vitis vinifera (wine grape) ]

Gene ID: 100248328, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100248328
Gene description
xyloglucan endotransglucosylase protein 6
Locus tag
VIT_00000416001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100248328 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (7749343..7751391)
102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (7708802..7710849)

Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene geraniol synthase Neighboring gene geranylgeranyl transferase type-2 subunit beta 1 Neighboring gene sucrose synthase 2-like Neighboring gene fasciclin-like arabinogalactan protein 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase protein 6
Names
xyloglucan endotransglucosylase/hydrolase protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

    Range
    7749343..7751391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002281538.5 → XP_002281574.1  xyloglucan endotransglucosylase protein 6

    See identical proteins and their annotated locations for XP_002281574.1

    UniProtKB/TrEMBL
    A0A438CUC2, A5BHG3
    Conserved Domains (2) summary
    PLN03161
    Location:9 → 291
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:25 → 291
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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