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LOC100247713 UPF0497 membrane protein 5 [ Vitis vinifera (wine grape) ]

Gene ID: 100247713, updated on 23-Apr-2024

Summary

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Gene symbol
LOC100247713
Gene description
UPF0497 membrane protein 5
Locus tag
VIT_00037957001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100247713 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (16572908..16575728, complement)
102 previous assembly 12X (GCF_000003745.3) 10 NC_012016.3 (11545950..11548792, complement)

Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene GDP-mannose transporter GONST3 Neighboring gene lysine-specific demethylase JMJ18 Neighboring gene protein LSD1 Neighboring gene uncharacterized LOC132254561

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation of ESTs in Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development. Peng FY, et al. Gene, 2007 Nov 1. PMID 17761391
  2. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
  3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CASP-like protein 1B2
Names
GSVIVT00035198001
GSVIVT01037957001
VITISV_004162
VIT_00037957001
Vv10s0092g00220
cASP-like protein 1B2
vvCASPL1B2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397737.1 → NP_001384666.1  CASP-like protein 1B2

    Status: VALIDATED

    Source sequence(s)
    CP126657, EC925758, FQ390108, FQ397934, GBXP01040359
    Conserved Domains (1) summary
    cl04571
    Location:31 → 174
    MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

    Range
    16572908..16575728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7QC16.2 GenPept UniProtKB/Swiss-Prot:A7QC16

Gene LinkOut

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Research Materials