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LOC100246897 probable galacturonosyltransferase 3 [ Vitis vinifera (wine grape) ]

Gene ID: 100246897, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100246897
Gene description
probable galacturonosyltransferase 3
Locus tag
VIT_00023883001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100246897 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 3 NC_081807.1 (2710879..2716768, complement)
102 previous assembly 12X (GCF_000003745.3) 3 NC_012009.3 (2732050..2737879, complement)

Chromosome 3 - NC_081807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100257163 Neighboring gene pentatricopeptide repeat-containing protein At2g17210 Neighboring gene auxin-responsive protein SAUR67 Neighboring gene auxin-responsive protein SAUR64-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081807.1 Reference ASM3070453v1 Primary Assembly

    Range
    2710879..2716768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010647546.3 → XP_010645848.1  probable galacturonosyltransferase 3

    See identical proteins and their annotated locations for XP_010645848.1

    UniProtKB/TrEMBL
    A5BZU1
    Conserved Domains (2) summary
    cd06429
    Location:373 → 670
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:54 → 684
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials