U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100246568 alpha-glucan water dikinase, chloroplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100246568, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100246568
Gene description
alpha-glucan water dikinase, chloroplastic
Locus tag
VIT_00013806001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100246568 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (7733914..7753573, complement)
102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (7389920..7409601, complement)

Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104879707 Neighboring gene uncharacterized LOC100250014 Neighboring gene pectinesterase inhibitor Neighboring gene high affinity nitrate transporter 2.5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-glucan water dikinase, chloroplastic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

    Range
    7733914..7753573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002270449.4 → XP_002270485.1  alpha-glucan water dikinase, chloroplastic isoform X2

    See identical proteins and their annotated locations for XP_002270485.1

    UniProtKB/TrEMBL
    A0A438J641, D7TDL2
    Conserved Domains (1) summary
    pfam01326
    Location:1272 → 1469
    PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain

  2. XM_010653413.3 → XP_010651715.1  alpha-glucan water dikinase, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_010651715.1

    UniProtKB/TrEMBL
    A0A438J641
    Conserved Domains (1) summary
    pfam01326
    Location:1273 → 1470
    PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain

  3. XM_059739708.1 → XP_059595691.1  alpha-glucan water dikinase, chloroplastic isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials