U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100245003 probable galacturonosyltransferase 7 [ Vitis vinifera (wine grape) ]

Gene ID: 100245003, updated on 23-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100245003
Gene description
probable galacturonosyltransferase 7
Locus tag
VIT_00029827001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100245003 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (225628..255441, complement)
102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (179311..209178, complement)

Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene protein SCARECROW Neighboring gene bifunctional protein FolD 1, mitochondrial Neighboring gene uncharacterized LOC132254154 Neighboring gene leucine-rich repeat receptor protein kinase HPCA1 Neighboring gene uncharacterized LOC100243295

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable galacturonosyltransferase 7
Names
transferase, transferring glycosyl groups / unknown protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

    Range
    225628..255441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010654787.3 → XP_010653089.1  probable galacturonosyltransferase 7

    UniProtKB/TrEMBL
    C5DB48, F6HMQ3
    Conserved Domains (2) summary
    cd06429
    Location:316 → 601
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02769
    Location:11 → 613
    PLN02769; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials