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LOC100244775 beta-1,3-galactosyltransferase GALT1 [ Vitis vinifera (wine grape) ]

Gene ID: 100244775, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100244775
Gene description
beta-1,3-galactosyltransferase GALT1
Locus tag
VIT_00019973001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100244775 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (12469473..12481242)
102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (12145133..12156883)

Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g02980, chloroplastic Neighboring gene extracellular ribonuclease LE Neighboring gene E3 ubiquitin-protein ligase MPSR1 Neighboring gene myb family transcription factor PHL8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase GALT1
Names
beta-1,3-galactosyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

    Range
    12469473..12481242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002269571.5 → XP_002269607.1  beta-1,3-galactosyltransferase GALT1

    See identical proteins and their annotated locations for XP_002269607.1

    UniProtKB/TrEMBL
    D7TN76
    Conserved Domains (3) summary
    PLN03133
    Location:1 → 636
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:164 → 356
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:399 → 583
    Galactosyl_T; Galactosyltransferase

  2. XM_010653664.3 → XP_010651966.1  beta-1,3-galactosyltransferase GALT1

    See identical proteins and their annotated locations for XP_010651966.1

    UniProtKB/TrEMBL
    D7TN76
    Conserved Domains (3) summary
    PLN03133
    Location:1 → 636
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:164 → 356
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:399 → 583
    Galactosyl_T; Galactosyltransferase

  3. XM_010653676.3 → XP_010651978.1  beta-1,3-galactosyltransferase GALT1

    See identical proteins and their annotated locations for XP_010651978.1

    UniProtKB/TrEMBL
    D7TN76
    Conserved Domains (3) summary
    PLN03133
    Location:1 → 636
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:164 → 356
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:399 → 583
    Galactosyl_T; Galactosyltransferase

  4. XM_010653667.3 → XP_010651969.1  beta-1,3-galactosyltransferase GALT1

    See identical proteins and their annotated locations for XP_010651969.1

    UniProtKB/TrEMBL
    D7TN76
    Conserved Domains (3) summary
    PLN03133
    Location:1 → 636
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:164 → 356
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:399 → 583
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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