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LOC100233071 starch synthase VI [ Vitis vinifera (wine grape) ]

Gene ID: 100233071, updated on 18-Sep-2024

Summary

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Gene symbol
LOC100233071
Gene description
starch synthase VI
Locus tag
VIT_00032233001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100233071 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (11738063..11758171)
102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (13509330..13529415)

Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 CYP716A15 Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene YTH domain-containing protein ECT4 Neighboring gene promoter-binding protein SPL10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase VI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281092.1 → NP_001268021.1  starch synthase VI

    See identical proteins and their annotated locations for NP_001268021.1

    Status: PROVISIONAL

    Source sequence(s)
    EU661372
    UniProtKB/TrEMBL
    B2ZGN0, F6H9N8
    Conserved Domains (2) summary
    cd03791
    Location:109 → 603
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:108 → 604
    glgA; glycogen/starch synthase, ADP-glucose type

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

    Range
    11738063..11758171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010658386.3 → XP_010656688.1  starch synthase VI isoform X2

    UniProtKB/TrEMBL
    F6H9N8
    Conserved Domains (1) summary
    cd03791
    Location:109 → 547
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...

  2. XM_010658385.3 → XP_010656687.1  starch synthase VI isoform X1

    UniProtKB/TrEMBL
    F6H9N8
    Conserved Domains (2) summary
    cd03791
    Location:72 → 566
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:71 → 567
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
Heading Accession and Version

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