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LOC100232904 endoglucanase 17 [ Vitis vinifera (wine grape) ]

Gene ID: 100232904, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100232904
Gene description
endoglucanase 17
Locus tag
VIT_00028042001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100232904 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (3757130..3759825)
102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (3376204..3378864)

Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene probable pectinesterase/pectinesterase inhibitor 7 Neighboring gene pectinesterase Neighboring gene sucrose synthase 2 Neighboring gene exopolygalacturonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression patterns of cell wall-modifying enzymes during grape berry development. Nunan KJ, et al. Planta, 2001 Dec. PMID 11800390
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 17
Names
cellulase CEL1-like
putative cellulase CEL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

    Range
    3757130..3759825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002271700.5 → XP_002271736.1  endoglucanase 17

    UniProtKB/TrEMBL
    F6HZ65
    Conserved Domains (1) summary
    PLN02266
    Location:23 → 511
    PLN02266; endoglucanase
Nucleotide Protein
Heading Accession and Version

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