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LOC100232898 beta-1,2-xylosyltransferase [ Vitis vinifera (wine grape) ]

Gene ID: 100232898, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100232898
Gene description
beta-1,2-xylosyltransferase
Locus tag
VIT_00037759001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Also known as
XT1
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Genomic context

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See LOC100232898 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 19 NC_081823.1 (7641732..7646439)
102 previous assembly 12X (GCF_000003745.3) 19 NC_012025.3 (7635972..7640683)

Chromosome 19 - NC_081823.1Genomic Context describing neighboring genes Neighboring gene pirin-like protein Neighboring gene uncharacterized LOC132253328 Neighboring gene putative MO25-like protein At5g47540 Neighboring gene uncharacterized LOC104877607

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,2-xylosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081823.1 Reference ASM3070453v1 Primary Assembly

    Range
    7641732..7646439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010646213.3 → XP_010644515.1  beta-1,2-xylosyltransferase isoform X2

    UniProtKB/TrEMBL
    Q2UVB4
    Conserved Domains (1) summary
    pfam04577
    Location:296 → 441
    DUF563; Protein of unknown function (DUF563)

  2. XM_002275317.5 → XP_002275353.1  beta-1,2-xylosyltransferase isoform X1

    UniProtKB/TrEMBL
    F6HEL9, Q2UVB4
    Conserved Domains (1) summary
    pfam04577
    Location:242 → 491
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
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