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PDHB pyruvate dehydrogenase E1 subunit beta [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100231264, updated on 13-Aug-2024

Summary

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Gene symbol
PDHB
Gene description
pyruvate dehydrogenase E1 subunit beta
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See PDHB in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 12 NC_044224.2 (8556608..8557312)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 12 NC_045011.1 (8530847..8531555)

Chromosome 12 - NC_044224.2Genomic Context describing neighboring genes Neighboring gene acyl-CoA oxidase 2 Neighboring gene potassium channel tetramerization domain containing 6 Neighboring gene PX domain containing serine/threonine kinase like Neighboring gene uncharacterized LOC115497032 Neighboring gene ribonuclease P/MRP subunit p14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Wada K, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17018643, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyruvate dehydrogenase (acetyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from pyruvate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Names
pyruvate dehydrogenase (lipoamide) beta
pyruvate dehydrogenase E1 beta subunit
pyruvate dehydrogenase E1-beta subunit-like
NP_001232565.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245636.1 → NP_001232565.1  pyruvate dehydrogenase E1 component subunit beta, mitochondrial

    See identical proteins and their annotated locations for NP_001232565.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ215549
    UniProtKB/TrEMBL
    B5G1H2
    Conserved Domains (1) summary
    cl11410
    Location:49 → 122
    TPP_enzyme_PYR; Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044224.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    8556608..8557312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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