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GPLD1 glycosylphosphatidylinositol specific phospholipase D1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100230775, updated on 13-Aug-2024

Summary

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Gene symbol
GPLD1
Gene description
glycosylphosphatidylinositol specific phospholipase D1
See related
Ensembl:ENSTGUG00000006411
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See GPLD1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 2 NC_044213.2 (70659650..70682726, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 2 NC_045000.1 (70571880..70594914, complement)

Chromosome 2 - NC_044213.2Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 2 Neighboring gene magnesium transporter MRS2 Neighboring gene uncharacterized LOC121469352 Neighboring gene aldehyde dehydrogenase 5 family member A1 Neighboring gene KIAA0319 ortholog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosylphosphatidylinositol phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor release IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-glycan-specific phospholipase D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044213.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    70659650..70682726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041714225.1 → XP_041570159.1  phosphatidylinositol-glycan-specific phospholipase D isoform X2

    Conserved Domains (3) summary
    smart00191
    Location:375 → 432
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:28 → 204
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:512 → 546
    FG-GAP; FG-GAP repeat

  2. XM_041714227.1 → XP_041570161.1  phosphatidylinositol-glycan-specific phospholipase D isoform X4

    Conserved Domains (3) summary
    smart00191
    Location:376 → 433
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:28 → 204
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:513 → 547
    FG-GAP; FG-GAP repeat

  3. XM_041714224.1 → XP_041570158.1  phosphatidylinositol-glycan-specific phospholipase D isoform X1

    UniProtKB/TrEMBL
    H0Z7S8
    Conserved Domains (3) summary
    smart00191
    Location:376 → 433
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:28 → 204
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:513 → 547
    FG-GAP; FG-GAP repeat

  4. XM_041714226.1 → XP_041570160.1  phosphatidylinositol-glycan-specific phospholipase D isoform X3

    Conserved Domains (1) summary
    smart00191
    Location:376 → 433
    Int_alpha; Integrin alpha (beta-propellor repeats)

RNA

  1. XR_005979336.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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