U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RPN1 ribophorin I [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100230761, updated on 13-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
RPN1
Gene description
ribophorin I
See related
Ensembl:ENSTGUG00000007857
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RPN1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 12 NC_044224.2 (11475364..11482839, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 12 NC_045011.1 (11449758..11457251, complement)

Chromosome 12 - NC_044224.2Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B8 Neighboring gene GATA binding protein 2 Neighboring gene uncharacterized LOC115497019 Neighboring gene RAB7A, member RAS oncogene family Neighboring gene histone H1.10

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044224.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    11475364..11482839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030283433.3 → XP_030139293.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A674GML5, H0ZC03
    Related
    ENSTGUP00000008111.2
    Conserved Domains (1) summary
    pfam04597
    Location:27 → 448
    Ribophorin_I; Ribophorin I

  2. XM_030283434.3 → XP_030139294.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A674GML5, H0ZC03
    Related
    ENSTGUP00000023706.1
    Conserved Domains (1) summary
    pfam04597
    Location:27 → 448
    Ribophorin_I; Ribophorin I
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.