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GPC6 glypican 6 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100230403, updated on 13-Aug-2024

Summary

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Gene symbol
GPC6
Gene description
glypican 6
See related
Ensembl:ENSTGUG00000011232
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See GPC6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1 NC_044211.2 (72621106..73132519)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1 NC_044998.1 (72733264..73455766)

Chromosome 1 - NC_044211.2Genomic Context describing neighboring genes Neighboring gene glypican 5 Neighboring gene uncharacterized LOC121470135 Neighboring gene uncharacterized LOC115495779 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC121470871 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044211.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    72621106..73132519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041719295.1 → XP_041575229.1  glypican-6

    UniProtKB/TrEMBL
    A0A674HDL2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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