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SGMS1 sphingomyelin synthase 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100229900, updated on 13-Aug-2024

Summary

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Gene symbol
SGMS1
Gene description
sphingomyelin synthase 1
See related
Ensembl:ENSTGUG00000005065
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See SGMS1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 6 NC_044218.2 (3935400..4025589)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 6 NC_045005.1 (3492459..3581683)

Chromosome 6 - NC_044218.2Genomic Context describing neighboring genes Neighboring gene multiple inositol-polyphosphate phosphatase 1 Neighboring gene uncharacterized LOC115495739 Neighboring gene putative neutral ceramidase C Neighboring gene APOBEC1 complementation factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044218.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    3935400..4025589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030275739.3 → XP_030131599.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_041716996.1 → XP_041572930.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_030275738.3 → XP_030131598.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_030275742.3 → XP_030131602.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Related
    ENSTGUP00000033344.1
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal

  5. XM_041716997.1 → XP_041572931.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_030275743.3 → XP_030131603.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Related
    ENSTGUP00000005207.2
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal

  7. XM_041716995.1 → XP_041572929.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

    UniProtKB/TrEMBL
    A0A674HGL3, H0Z3R3
    Conserved Domains (2) summary
    cd09514
    Location:1 → 72
    SAM_SGMS1; SAM domain of sphingomyelin synthase
    pfam14360
    Location:274 → 347
    PAP2_C; PAP2 superfamily C-terminal
Nucleotide Protein
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