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SCD stearoyl-CoA desaturase [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100229833, updated on 13-Aug-2024

Summary

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Gene symbol
SCD
Gene description
stearoyl-CoA desaturase
See related
Ensembl:ENSTGUG00000007683
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human all
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Genomic context

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See SCD in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 6 NC_044218.2 (17126474..17147213, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 6 NC_045005.1 (16374865..16395865, complement)

Chromosome 6 - NC_044218.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121470146 Neighboring gene Wnt family member 8B Neighboring gene uncharacterized LOC116808545 Neighboring gene polycystin 2 like 1, transient receptor potential cation channel Neighboring gene broad substrate specificity ATP-binding cassette transporter ABCG2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables palmitoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables stearoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in unsaturated fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stearoyl-CoA desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044218.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    17126474..17147213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002198116.6 → XP_002198152.3  stearoyl-CoA desaturase

    UniProtKB/TrEMBL
    A0A674H3V0, H0ZBG6
    Conserved Domains (1) summary
    cd03505
    Location:98 → 338
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
Nucleotide Protein
Heading Accession and Version

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