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SYNJ1 synaptojanin 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100228100, updated on 13-Aug-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSTGUG00000013445
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
33
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1 NC_044211.2 (19291981..19342000)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1 NC_044998.1 (19091814..19141838)

Chromosome 1 - NC_044211.2Genomic Context describing neighboring genes Neighboring gene nucleolar pre-ribosomal-associated protein 1-like Neighboring gene uncharacterized LOC121469263 Neighboring gene uncharacterized LOC115493692 Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044211.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    19291981..19342000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030264833.3 → XP_030120693.1  synaptojanin-1 isoform X11

    UniProtKB/TrEMBL
    A0A674GPT1
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1062 → 1294
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_030264771.3 → XP_030120631.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A674GA48
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1059 → 1499
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_030264801.3 → XP_030120661.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    H0ZT98
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1059 → 1486
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_030264794.3 → XP_030120654.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A674GA48
    Related
    ENSTGUP00000019429.1
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1059 → 1486
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_030264811.3 → XP_030120671.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A674GA48
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1059 → 1473
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_030264815.3 → XP_030120675.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    H0ZT98
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1067 → 1378
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_030264787.3 → XP_030120647.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A674GA48
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1051 → 1491
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:862 → 1004
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_030264807.3 → XP_030120667.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    H0ZT98
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1051 → 1478
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:862 → 1004
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_030264823.3 → XP_030120683.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A674HET9, H0ZT98
    Related
    ENSTGUP00000033088.1
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1059 → 1370
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1004
    RRM_SF; RNA recognition motif (RRM) superfamily

  10. XM_030264782.3 → XP_030120642.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A674GA48
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:19 → 480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1056 → 1496
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:867 → 1009
    RRM_SF; RNA recognition motif (RRM) superfamily

  11. XM_030264830.3 → XP_030120690.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A674GPT1
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1062 → 1287
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:19 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:870 → 1012
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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