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SYNJ2 synaptojanin 2 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100227989, updated on 13-Aug-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
See related
Ensembl:ENSTGUG00000011082
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 3 NC_044214.2 (60194016..60259091)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 3 NC_045001.1 (59271617..59336764)

Chromosome 3 - NC_044214.2Genomic Context describing neighboring genes Neighboring gene basic proline-rich protein-like Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044214.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    60194016..60259091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030269540.3 → XP_030125400.3  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    H0ZLG2
    Conserved Domains (4) summary
    cd09099
    Location:528 → 860
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03378
    Location:1132 → 1416
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:25 → 487
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:872 → 1007
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_030269541.3 → XP_030125401.3  synaptojanin-2 isoform X2

    UniProtKB/TrEMBL
    A0A674GLJ6
    Conserved Domains (4) summary
    cd09099
    Location:528 → 860
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03378
    Location:1087 → 1371
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:25 → 487
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:872 → 1007
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_030269542.3 → XP_030125402.3  synaptojanin-2 isoform X3

    Conserved Domains (4) summary
    cd09099
    Location:403 → 735
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03378
    Location:1007 → 1291
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:2 → 362
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:747 → 882
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_030269545.3 → XP_030125405.3  synaptojanin-2 isoform X4

    Conserved Domains (4) summary
    cd09099
    Location:243 → 575
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    PHA03307
    Location:977 → 1131
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5329
    Location:4 → 202
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:587 → 722
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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