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PYGB glycogen phosphorylase B [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100227814, updated on 13-Aug-2024

Summary

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Gene symbol
PYGB
Gene description
glycogen phosphorylase B
See related
Ensembl:ENSTGUG00000005015
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See PYGB in Genome Data Viewer
Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 3 NC_044214.2 (93506352..93523018)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 3 NC_045001.1 (92346010..92362735)

Chromosome 3 - NC_044214.2Genomic Context describing neighboring genes Neighboring gene visual system homeobox 1 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 Neighboring gene abhydrolase domain containing 12, lysophospholipase Neighboring gene uncharacterized LOC115494486

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, brain form
Names
phosphorylase, glycogen; brain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044214.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    93506352..93523018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030268898.3 → XP_030124758.3  glycogen phosphorylase, brain form

    UniProtKB/TrEMBL
    H0Z3U2
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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