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LOC100227480 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100227480, updated on 13-Aug-2024

Summary

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Gene symbol
LOC100227480
Gene description
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
See related
Ensembl:ENSTGUG00000013397
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
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Genomic context

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See LOC100227480 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1 NC_044211.2 (23496245..23524350)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1 NC_044998.1 (23255959..23284077)

Chromosome 1 - NC_044211.2Genomic Context describing neighboring genes Neighboring gene uroplakin 1B Neighboring gene Rho GTPase activating protein 31 Neighboring gene beta-1,4-galactosyltransferase 3 Neighboring gene beta-1,4-galactosyltransferase 4 Neighboring gene transmembrane protein 39A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044211.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    23496245..23524350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030265971.3 → XP_030121831.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    H0ZT48
    Related
    ENSTGUP00000013794.2
    Conserved Domains (1) summary
    cd00218
    Location:94 → 325
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_041714362.1 → XP_041570296.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    H0ZT48
    Conserved Domains (1) summary
    cd00218
    Location:93 → 324
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_030265961.3 → XP_030121821.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    H0ZT48
    Conserved Domains (1) summary
    cd00218
    Location:94 → 325
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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