U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SC5D sterol-C5-desaturase [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100226384, updated on 13-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
Ensembl:ENSTGUG00000024762
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SC5D in Genome Data Viewer
Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 24 NC_044236.2 (4867097..4872394, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 24 NC_045022.1 (4673303..4678948, complement)

Chromosome 24 - NC_044236.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115498347 Neighboring gene sortilin related receptor 1 Neighboring gene alpha-tectorin Neighboring gene tubulin folding cofactor E like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044236.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    4867097..4872394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041720877.1 → XP_041576811.1  lathosterol oxidase isoform X2

    UniProtKB/TrEMBL
    A0A674GK85
    Conserved Domains (1) summary
    COG3000
    Location:31 → 259
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  2. XM_030290866.3 → XP_030146726.3  lathosterol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A674GK85
    Conserved Domains (1) summary
    COG3000
    Location:31 → 259
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.