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SMPD4 sphingomyelin phosphodiesterase 4 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100225712, updated on 13-Aug-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
See related
Ensembl:ENSTGUG00000010118
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 15 NC_044227.2 (2459871..2476559, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 15 NC_045014.1 (2421659..2438225, complement)

Chromosome 15 - NC_044227.2Genomic Context describing neighboring genes Neighboring gene kelch like family member 22 Neighboring gene mediator complex subunit 15 Neighboring gene gamma-glutamyltransferase 5 Neighboring gene gamma-glutamyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044227.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    2459871..2476559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030285638.3 → XP_030141498.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A674H653, H0ZIN1
    Related
    ENSTGUP00000010448.2
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_030285639.3 → XP_030141499.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A674H653, A0A674H694
    Related
    ENSTGUP00000030367.1
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 742
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
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