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PLA2G6 phospholipase A2 group VI [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100222459, updated on 13-Aug-2024

Summary

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Gene symbol
PLA2G6
Gene description
phospholipase A2 group VI
See related
Ensembl:ENSTGUG00000010433
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See PLA2G6 in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1A NC_044212.2 (49564716..49580588)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1A NC_044999.1 (48972876..48988766)

Chromosome 1A - NC_044212.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 184B Neighboring gene MAF bZIP transcription factor F Neighboring gene BAR/IMD domain containing adaptor protein 2 like 2 Neighboring gene solute carrier family 16 member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-independent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiolipin acyl-chain remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
85/88 kDa calcium-independent phospholipase A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044212.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    49564716..49580588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030263014.3 → XP_030118874.3  85/88 kDa calcium-independent phospholipase A2 isoform X1

    UniProtKB/TrEMBL
    A0A674HEU9, H0ZJK1
    Conserved Domains (4) summary
    cd07212
    Location:480 → 793
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    sd00045
    Location:151 → 182
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:154 → 204
    Ank_4; Ankyrin repeats (many copies)
    cl39094
    Location:189 → 385
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_030263015.3 → XP_030118875.3  85/88 kDa calcium-independent phospholipase A2 isoform X2

    UniProtKB/TrEMBL
    A0A674GJ48, A0A674HEU9
    Conserved Domains (4) summary
    cd07212
    Location:429 → 742
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    sd00045
    Location:151 → 182
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:154 → 204
    Ank_4; Ankyrin repeats (many copies)
    cl39094
    Location:189 → 400
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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