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LOC100221947 carbohydrate sulfotransferase 9 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100221947, updated on 13-Aug-2024

Summary

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Gene symbol
LOC100221947
Gene description
carbohydrate sulfotransferase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
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Genomic context

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See LOC100221947 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 5 NC_044217.2 (24708476..24723016)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 5 NC_045004.1 (24881213..24895762)

Chromosome 5 - NC_044217.2Genomic Context describing neighboring genes Neighboring gene nucleolar and spindle associated protein 1 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 1 Neighboring gene RTF1 homolog, Paf1/RNA polymerase II complex component Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Wada K, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17018643, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044217.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    24708476..24723016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030274327.3 → XP_030130187.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  2. XM_030274319.3 → XP_030130179.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  3. XM_030274323.3 → XP_030130183.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  4. XM_030274326.3 → XP_030130186.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  5. XM_030274322.3 → XP_030130182.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  6. XM_030274321.3 → XP_030130181.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  7. XM_030274320.3 → XP_030130180.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  8. XM_002200243.5 → XP_002200279.4  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  9. XM_030274324.3 → XP_030130184.3  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0

  10. XM_041716633.1 → XP_041572567.1  carbohydrate sulfotransferase 9

    UniProtKB/TrEMBL
    H0ZKR0
Nucleotide Protein
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