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DDX41 DEAD-box helicase 41 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100221383, updated on 13-Aug-2024

Summary

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Gene symbol
DDX41
Gene description
DEAD-box helicase 41
See related
Ensembl:ENSTGUG00000000413
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See DDX41 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 13 NC_044225.2 (14742957..14748958)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 13 NC_045012.1 (15190909..15196916)

Chromosome 13 - NC_044225.2Genomic Context describing neighboring genes Neighboring gene lateral signaling target protein 2 homolog Neighboring gene family with sequence similarity 193 member B Neighboring gene docking protein 3 Neighboring gene PDZ and LIM domain 7 Neighboring gene drebrin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044225.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    14742957..14748958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002193807.6 → XP_002193843.4  probable ATP-dependent RNA helicase DDX41 isoform X1

    UniProtKB/TrEMBL
    H0YQ77
    Conserved Domains (2) summary
    PTZ00110
    Location:147 → 561
    PTZ00110; helicase; Provisional
    cd17951
    Location:187 → 392
    DEADc_DDX41; DEAD-box helicase domain of DEAD box protein 41

  2. XM_030283661.3 → XP_030139521.1  probable ATP-dependent RNA helicase DDX41 isoform X2

    UniProtKB/TrEMBL
    H0YQ77
    Conserved Domains (2) summary
    PTZ00110
    Location:26 → 440
    PTZ00110; helicase; Provisional
    cd17951
    Location:66 → 271
    DEADc_DDX41; DEAD-box helicase domain of DEAD box protein 41
Nucleotide Protein
Heading Accession and Version

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