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TGDS TDP-glucose 4,6-dehydratase [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100220800, updated on 13-Aug-2024

Summary

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Gene symbol
TGDS
Gene description
TDP-glucose 4,6-dehydratase
See related
Ensembl:ENSTGUG00000011214
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See TGDS in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1 NC_044211.2 (73176188..73189940, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1 NC_044998.1 (73498008..73512558, complement)

Chromosome 1 - NC_044211.2Genomic Context describing neighboring genes Neighboring gene dopachrome tautomerase Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene G protein-coupled receptor 180 Neighboring gene SRY-box transcription factor 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dTDP-glucose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-sugar metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dTDP-D-glucose 4,6-dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044211.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    73176188..73189940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002196893.6 → XP_002196929.2  dTDP-D-glucose 4,6-dehydratase isoform X2

    UniProtKB/TrEMBL
    A0A674HUA4
    Related
    ENSTGUP00000037963.1
    Conserved Domains (1) summary
    cd05246
    Location:33 → 351
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  2. XM_030276091.3 → XP_030131951.3  dTDP-D-glucose 4,6-dehydratase isoform X1

    UniProtKB/TrEMBL
    A0A674HUA4, H0ZLU7
    Conserved Domains (1) summary
    cd05246
    Location:33 → 376
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

  3. XM_041716938.1 → XP_041572872.1  dTDP-D-glucose 4,6-dehydratase isoform X3

    UniProtKB/TrEMBL
    A0A674HUA4
    Conserved Domains (1) summary
    cd05246
    Location:33 → 309
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

RNA

  1. XR_005980799.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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