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MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100219729, updated on 13-Aug-2024

Summary

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Gene symbol
MDGA1
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 1
See related
Ensembl:ENSTGUG00000007851
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See MDGA1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 3 NC_044214.2 (82765796..82914215, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 3 NC_045001.1 (81627836..81773374, complement)

Chromosome 3 - NC_044214.2Genomic Context describing neighboring genes Neighboring gene cap methyltransferase 1 Neighboring gene coiled-coil domain containing 167 Neighboring gene uncharacterized LOC121469758 Neighboring gene uncharacterized LOC115494431 Neighboring gene zinc finger AN1-type containing 3 Neighboring gene microRNA mir-2967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing glycosylphosphatidylinositol anchor protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044214.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    82765796..82914215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030268620.3 → XP_030124480.3  MAM domain-containing glycosylphosphatidylinositol anchor protein 1

    UniProtKB/TrEMBL
    H0ZC02
    Conserved Domains (5) summary
    cd06263
    Location:767 → 930
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00408
    Location:572 → 636
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:468 → 554
    IG; Immunoglobulin
    smart00410
    Location:172 → 254
    IG_like; Immunoglobulin like
    cd00096
    Location:575 → 579
    Ig; Ig strand B [structural motif]
Nucleotide Protein
Heading Accession and Version

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