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HPSE heparanase [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100218163, updated on 13-Aug-2024

Summary

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Gene symbol
HPSE
Gene description
heparanase
See related
Ensembl:ENSTGUG00000002169
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See HPSE in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 4 NC_044215.2 (60978152..60990963, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 4 NC_045002.1 (61213543..61226986, complement)

Chromosome 4 - NC_044215.2Genomic Context describing neighboring genes Neighboring gene placenta-specific gene 8 protein Neighboring gene coenzyme Q2, polyprenyltransferase Neighboring gene helicase, POLQ like Neighboring gene mitochondrial ribosomal protein S18C Neighboring gene abraxas 1, BRCA1 A complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044215.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    60978152..60990963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012573301.4 → XP_012428755.4  heparanase

    UniProtKB/TrEMBL
    H0YVD2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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