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CHID1 chitinase domain containing 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100218057, updated on 8-Mar-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
See related
Ensembl:ENSTGUG00000009726
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 5 NC_044217.2 (16634498..16731255)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 5 NC_045004.1 (16796970..16893616)

Chromosome 5 - NC_044217.2Genomic Context describing neighboring genes Neighboring gene mucin 2, oligomeric mucus/gel-forming Neighboring gene mucin 6, oligomeric mucus/gel-forming Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene tetraspanin 4 Neighboring gene uncharacterized LOC121470062 Neighboring gene uncharacterized LOC121470064

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044217.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    16634498..16731255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030275476.3 → XP_030131336.3  chitinase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674GBG9
    Conserved Domains (1) summary
    cd02876
    Location:82 → 398
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  2. XM_030275474.3 → XP_030131334.3  chitinase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674GBG9
    Conserved Domains (1) summary
    cd02876
    Location:82 → 398
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

  3. XM_030275475.3 → XP_030131335.3  chitinase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A674GBG9, H0ZHH9
    Conserved Domains (1) summary
    cd02876
    Location:91 → 407
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
Nucleotide Protein
Heading Accession and Version

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