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TOR1B torsin family 1 member B [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100217655, updated on 13-Aug-2024

Summary

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Gene symbol
TOR1B
Gene description
torsin family 1 member B
See related
Ensembl:ENSTGUG00000004451
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See TOR1B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 17 NC_044229.2 (6201307..6207431)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 17 NC_045015.1 (6164065..6170458)

Chromosome 17 - NC_044229.2Genomic Context describing neighboring genes Neighboring gene paired related homeobox 2 Neighboring gene uncharacterized LOC115497563 Neighboring gene prostaglandin E synthase Neighboring gene torsin-1A Neighboring gene chromosome 17 C9orf78 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044229.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    6201307..6207431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012578324.4 → XP_012433778.3  torsin-1B isoform X2

    UniProtKB/TrEMBL
    A0A674GJD6
    Conserved Domains (1) summary
    TIGR02639
    Location:64 → 307
    ClpA; ATP-dependent Clp protease ATP-binding subunit clpA

  2. XM_002195184.5 → XP_002195220.1  torsin-1B isoform X1

    UniProtKB/TrEMBL
    A0A674GDT5, H0Z1Z0
    Related
    ENSTGUP00000004580.2
    Conserved Domains (2) summary
    pfam06309
    Location:49 → 175
    Torsin
    TIGR02639
    Location:67 → 310
    ClpA; ATP-dependent Clp protease ATP-binding subunit clpA
Nucleotide Protein
Heading Accession and Version

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