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LOC100217143 uncharacterized LOC100217143 [ Zea mays ]

Gene ID: 100217143, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100217143
Gene description
uncharacterized LOC100217143
Locus tag
ZEAMMB73_Zm00001d028267
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
TPS5; TIDP3174; GRMZM2G099860
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Genomic context

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See LOC100217143 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (28391348..28395668, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (28638565..28642881, complement)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene response regulator 8 Neighboring gene uncharacterized LOC103632944 Neighboring gene small nucleolar RNA R41 Neighboring gene uncharacterized LOC100191641

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
  2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trehalose-6-phosphate synthase
Names
putative trehalose phosphatase/synthase family protein
trehalose-6-phosphate synthase2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348792.1 → NP_001335721.1  trehalose-6-phosphate synthase

    Status: VALIDATED

    Source sequence(s)
    AY104590, BT018868, BT038005, GU228588
    UniProtKB/TrEMBL
    A0A1D6JU24, D2KLI5
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    28391348..28395668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020547186.2 → XP_020402775.1  trehalose-6-phosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D6JU24, D2KLI5
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_035964386.1 → XP_035820279.1  trehalose-6-phosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D6JU24, D2KLI5
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_020547183.3 → XP_020402772.1  trehalose-6-phosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D6JU24, D2KLI5
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001143509.1: Suppressed sequence

    Description
    NM_001143509.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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