U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100216736 uncharacterized LOC100216736 [ Zea mays ]

Gene ID: 100216736, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100216736
Gene description
uncharacterized LOC100216736
Locus tag
ZEAMMB73_Zm00001d018214
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
pco106344; GRMZM2G046459
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100216736 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (219288621..219291858, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (216732294..216735531, complement)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase 1Acc oxidase Neighboring gene salivary acidic proline-rich phosphoprotein 1/2-like Neighboring gene uncharacterized LOC103627801 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Glucan endo-1,3-beta-glucosidase 12; uncharacterized protein LOC100216736
Names
O-Glycosyl hydrolase family 17 protein
pco106344(452)
putative O-glycosyl hydrolase family 17 protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143141.2 → NP_001136613.2  Glucan endo-1,3-beta-glucosidase 12 precursor

    See identical proteins and their annotated locations for NP_001136613.2

    Status: VALIDATED

    Source sequence(s)
    BT041736
    UniProtKB/TrEMBL
    B4FA75, B4FJH8
    Conserved Domains (2) summary
    smart00768
    Location:393 → 475
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:29 → 351
    Glyco_hydro_1; Glycosyl hydrolase family 1

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    219288621..219291858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020553106.1 → XP_020408695.1  uncharacterized protein LOC100216736 isoform X1

    UniProtKB/TrEMBL
    A0A3L6EGW4, C4J480
    Conserved Domains (2) summary
    smart00768
    Location:393 → 471
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:29 → 351
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials