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LOC100214647 uncharacterized LOC100214647 [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100214647, updated on 1-Aug-2024

Summary

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Gene symbol
LOC100214647
Gene description
uncharacterized LOC100214647
See related
EnsemblRapid:LOC100214647
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
Also known as
HT4; col6; collagen
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Genomic context

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See LOC100214647 in Genome Data Viewer
Location:
chromosome: 01
Exon count:
49
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 01 NC_088964.1 (19134377..19173189)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 01 NC_088920.1 (17898775..17936119)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 4 NC_061159.1 (48048046..48086477, complement)

Chromosome 01 - NC_088964.1Genomic Context describing neighboring genes Neighboring gene protein NLRC5-like Neighboring gene uncharacterized LOC105844718 Neighboring gene collagen alpha-1(IV) chain-like Neighboring gene uncharacterized LOC136091068 Neighboring gene uncharacterized LOC124810378 Neighboring gene uncharacterized LOC101241761

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The collagens of hydra provide insight into the evolution of metazoan extracellular matrices. Zhang X, et al. J Biol Chem, 2007 Mar 2. PMID 17204477

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100214647
Names
collagen-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088964.1 Reference HydraT2T_105 Primary Assembly

    Range
    19134377..19173189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047275163.2 → XP_047131119.1  uncharacterized protein LOC100214647 isoform X1

    UniProtKB/TrEMBL
    A0A8B7DRR6
    Related
    XP_047131119.1

Alternate HydraT2T_AEP

Genomic

  1. NC_088920.1 Alternate HydraT2T_AEP

    Range
    17898775..17936119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065787508.1 → XP_065643580.1  uncharacterized protein LOC100214647 isoform X2

    UniProtKB/TrEMBL
    A0A8B7DRR6
Nucleotide Protein
Heading Accession and Version

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