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LOC100212072 mitochondrial basic amino acids transporter [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100212072, updated on 1-Aug-2024

Summary

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Gene symbol
LOC100212072
Gene description
mitochondrial basic amino acids transporter
See related
EnsemblRapid:LOC100212072
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC100212072 in Genome Data Viewer
Location:
chromosome: 09
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 09 NC_088972.1 (28823783..28838570)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 09 NC_088928.1 (30763485..30782888)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 5 NC_061160.1 (29384398..29399185)

Chromosome 09 - NC_088972.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136095358 Neighboring gene uncharacterized LOC136095359 Neighboring gene N-terminal kinase-like protein Neighboring gene latent-transforming growth factor beta-binding protein 2 Neighboring gene uncharacterized LOC136095034

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088972.1 Reference HydraT2T_105 Primary Assembly

    Range
    28823783..28838570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012698639.2 → XP_012554093.1  mitochondrial basic amino acids transporter isoform X3

    See identical proteins and their annotated locations for XP_012554093.1

    UniProtKB/TrEMBL
    A0A8B7D8J3
    Related
    XP_012554093.1, XM_012698639.2
    Conserved Domains (1) summary
    pfam00153
    Location:93 → 185
    Mito_carr; Mitochondrial carrier protein

  2. XM_047276914.2 → XP_047132870.1  mitochondrial basic amino acids transporter isoform X5

    Related
    XP_047132870.1

  3. XM_012698637.3 → XP_012554091.1  mitochondrial basic amino acids transporter isoform X3

    See identical proteins and their annotated locations for XP_012554091.1

    UniProtKB/TrEMBL
    A0A8B7D8J3
    Related
    XP_012554091.1
    Conserved Domains (1) summary
    pfam00153
    Location:93 → 185
    Mito_carr; Mitochondrial carrier protein

  4. XM_047276911.1 → XP_047132867.1  mitochondrial basic amino acids transporter isoform X1

    Related
    XP_047132867.1, XM_047276911.1

  5. XM_047276913.1 → XP_047132869.1  mitochondrial basic amino acids transporter isoform X4

    Related
    XP_047132869.1, XM_047276913.1

  6. XM_012698640.3 → XP_012554094.1  mitochondrial basic amino acids transporter isoform X3

    See identical proteins and their annotated locations for XP_012554094.1

    UniProtKB/TrEMBL
    A0A8B7D8J3
    Related
    XP_012554094.1
    Conserved Domains (1) summary
    pfam00153
    Location:93 → 185
    Mito_carr; Mitochondrial carrier protein

  7. XM_012698638.3 → XP_012554092.1  mitochondrial basic amino acids transporter isoform X2

    See identical proteins and their annotated locations for XP_012554092.1

    UniProtKB/TrEMBL
    A0A8B7D8J3
    Related
    XP_012554092.1
    Conserved Domains (1) summary
    pfam00153
    Location:93 → 185
    Mito_carr; Mitochondrial carrier protein

  8. XM_047276915.2 → XP_047132871.1  mitochondrial basic amino acids transporter isoform X6

    Related
    XP_047132871.1

  9. XM_065825799.1 → XP_065681871.1  mitochondrial basic amino acids transporter isoform X7

    UniProtKB/TrEMBL
    A0A8B7D7E2

Alternate HydraT2T_AEP

Genomic

  1. NC_088928.1 Alternate HydraT2T_AEP

    Range
    30763485..30782888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065805299.1 → XP_065661371.1  mitochondrial basic amino acids transporter isoform X12

  2. XM_065805296.1 → XP_065661368.1  mitochondrial basic amino acids transporter isoform X9

  3. XM_065805300.1 → XP_065661372.1  mitochondrial basic amino acids transporter isoform X13

  4. XM_065805297.1 → XP_065661369.1  mitochondrial basic amino acids transporter isoform X10

  5. XM_065805301.1 → XP_065661373.1  mitochondrial basic amino acids transporter isoform X14

  6. XM_065805295.1 → XP_065661367.1  mitochondrial basic amino acids transporter isoform X8

  7. XM_065805298.1 → XP_065661370.1  mitochondrial basic amino acids transporter isoform X11

Nucleotide Protein
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