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LOC100206935 crk-like protein [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100206935, updated on 27-Jun-2024

Summary

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Gene symbol
LOC100206935
Gene description
crk-like protein
See related
EnsemblRapid:LOC100206935
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC100206935 in Genome Data Viewer
Location:
chromosome: 05
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 05 NC_088968.1 (30235145..30279467)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 05 NC_088924.1 (36651673..36692275)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 15 NC_061170.1 (7946134..7990461, complement)

Chromosome 05 - NC_088968.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin-15 Neighboring gene uncharacterized LOC124807206 Neighboring gene uncharacterized LOC136093504 Neighboring gene uncharacterized LOC136093505 Neighboring gene uncharacterized LOC105846696 Neighboring gene uncharacterized LOC136093506

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome. Wenger Y, et al. BMC Genomics, 2013 Mar 25. PMID 23530871, Free PMC Article
  2. Punctuated emergences of genetic and phenotypic innovations in eumetazoan, bilaterian, euteleostome, and hominidae ancestors. Wenger Y, et al. Genome Biol Evol, 2013. PMID 24065732, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crk-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088968.1 Reference HydraT2T_105 Primary Assembly

    Range
    30235145..30279467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047268684.2 → XP_047124640.1  crk-like protein isoform X1

    UniProtKB/TrEMBL
    T2MF94
    Related
    XP_047124640.1

  2. XM_047268685.2 → XP_047124641.1  crk-like protein isoform X1

    UniProtKB/TrEMBL
    T2MF94
    Related
    XP_047124641.1

Alternate HydraT2T_AEP

Genomic

  1. NC_088924.1 Alternate HydraT2T_AEP

    Range
    36651673..36692275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065798064.1 → XP_065654136.1  crk-like protein isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials