LOC100199754 collagen alpha-1(I) chain-like [Hydra vulgaris (swiftwater hydra)] - Gene

Summary

Gene symbol: LOC100199754
Gene description: collagen alpha-1(I) chain-like
See related: EnsemblRapid:LOC100199754
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Hydra vulgaris
Lineage: Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
Also known as: HT1; HT2; collagen
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Genomic context

See LOC100199754 in Genome Data Viewer

Location:: chromosome: 11

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	HydraT2T_105 (GCF_037890685.1)	11	NC_088974.1 (27306610..27320139, complement)
RS_2024_06	current	HydraT2T_AEP (GCF_038396675.1)	11	NC_088930.1 (27812354..27829437, complement)
103	previous assembly	Hydra_105_v3 (GCF_022113875.1)	7	NC_061162.1 (26524794..26538355, complement)

Chromosome 11 - NC_088974.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent conferring tensile strength	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in extracellular matrix organization	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in collagen-containing extracellular matrix	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-1(I) chain-like

Names: fibrillar collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001309723.1 → NP_001296652.1 collagen alpha-1(I) chain-like precursor

See identical proteins and their annotated locations for NP_001296652.1

Status: PROVISIONAL

Source sequence(s)

AF525468

UniProtKB/TrEMBL

Q8MUF5

Conserved Domains (2) summary

pfam01391
Location:306 → 363

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1184 → 1411

COLFI; Fibrillar collagen C-terminal domain

RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

NC_088974.1 Reference HydraT2T_105 Primary Assembly

Range

27306610..27320139 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002158283.5 → XP_002158319.2 collagen alpha-1(I) chain-like isoform X1

UniProtKB/TrEMBL

A0A8B6XJN2

Related

XP_002158319.2

Conserved Domains (2) summary

NF038329
Location:435 → 657

gly_rich_SclB; LPXTG-anchored collagen-like adhesin Scl2/SclB

cl02436
Location:1184 → 1411

COLFI; Fibrillar collagen C-terminal domain